Six weeks sequence analysis bootcamp:

Week 1: Unix environment

  • Click to download the slides (pdf)
  • Click to download the excercises (pdf)

Week 2: Databases, annotations, genomic resources

  • Click to download the slides (pdf)

Week 3: RNA-Seq data processing

  • Click to access class material for week 3

Week 4: The Galaxy environment/UCSC genome browser

Week 5: RNA-Seq data processing/analysis using Galaxy

Week 6: RNA-Seq data analysis using R

  • Please finish the tutorial before you come to the class below (8 section) to start learning R
    tryr.codeschool.com

Office Hours:

Mondays
  • Henna:
  • 10-11 am Monday AS4 2067
  • Alfred:
  • 1-2 pm Monday AS4 1079
    Fridays
  • Jill:
  • 9 -10 am Friday AS4 1079
  • Alper:
  • 1-2 pm Friday AS4 2067
  • Hakan:
  • 3-4 pm Friday AS4 1079
  • Manuel:
  • 4-5 pm Friday AS4 1071